Highlights

Improvements

tSNE run on subpopulations
tSNE run on raw expression matrix (not recommended), as opposed to principal components, will now produce a sensible plot
Dot plot overlays now supported
Synthetic parameter histograms correctly graphed
Analyses no longer lose their associated raw data

“Export Eigen Vectors” button from Principal Component type Dimensionality Reduction dialog is not functioning.
Only demo data can be loaded when running SeqGeq in demo mode; i.e. concatenated data (even from demo files) cannot be loaded into SeqGeq in demo mode.
Some hotkeys meant to open tabs in the Workspace will generate a bug report window.
Bug reporting window does not send information to FlowJo, LLC. Workaround: Send an email to tech support for a speedy reply and troubleshooting: seqgeq@flowjo.com
The 24 hour authentication grace period for temporary offline access will sometimes fail to correctly activate.
Running tSNE on a raw expression matrix is not advised. Workaround: We recommend running tSNE on principal components, after running PCA on the expression matrix of interest.
For long x-axis names, the color mapping key can overlap this annotation. Workaround: Reduce the size of the x-axis annotation from the Graph Definition window.
On a Mac, R-based plugins fail to calculate if the file paths contains a space or other special characters. Workaround: Remove spaces and special characters from file paths associated with the analysis.
DRP wait time warning messages are overly conservative and need recalibration.

If you have any questions or comments regarding the SeqGeq platform we greatly appreciate any feedback.