FlowJo Preferences can store your preferred starting point for specialized platform analysis. This includes Cell Cycle and Proliferation!
Fig 1: The Cytometry Platforms Preferences panel
Cell Cycle preferences allow setting of the default model that Cell Cycle nodes should be created with – Watson vs DJF. You can also control aesthetic details such as which layers of the model to display, and how to color the different phases.
Kinetics preferences store the default fitting options for the kinetics window, including the summary statistic choice, percentile setting, and type of smoothing.
Proliferation preferences store the default number of proliferation peaks.
All of the platforms preferences come with a Help button which should take you to the pertinent documentation page in our manual.