FlowJo’s Table Editor includes options to accent/highlight values via the use of heat map, distribution stats, or expected range. These are assigned using the Columns band of the Table Editor ribbon: Heat-mapping is a visual technique which assigns a yellow/blue gradient to a range of data, varying the color based on the current cells’ value relative… Read more »

There are three different options to choose from in terms of Table Iteration: you may iterate by sample, panel, or keyword. Iterate by Sample Selecting this option means that you will include every sample in the selected group. Create a table by choosing the “T-Cell Panel” as the group, and Iterate by “sample”. You will… Read more »

From the Table Editor, tabular reports can be exported in a variety of formats: Text CSV Excel HTML SQL XML Excel XML FlowJo To export tables in FlowJo’s Table Editor: Drag the samples and/or statistics from the workspace to the Table Editor. Click on the drop-down menu next to “To File” in the Output band and select… Read more »

FlowJo’s Table Editor supports the alternate display of tabular information via plots. Available plots include Time Series, and Correlation. Access plots via the Plots band within the Visualize tab in the Table Editor’s ribbon: Time Series Plots Time series plots require the input of one or more columns: select one or more of your table’s… Read more »

Get your statistics, keywords, and formulas into the Table Editor for processing! There are three types of columns you can create when you click the “Add Column” button in the Table Editor:  Statistic, Keyword, and Formula columns. In each case you can name the column, define it as a control value, choose whether or not to display its… Read more »

The Table Editor includes an interface for fine-tuning the formatting and content of each column — the Column Information dialog. This can be accessed via the “Add Column” and “Edit Column” buttons or by double-clicking on any row in the Table Editor. The Column Information dialog is shown below: This dialog’s functions are described below:… Read more »

In FlowJo, batch analysis takes advantage of your computer’s processing power and follows an analysis template to analyze multiple sets of data. Similarly to batching gates in the workspace and batching plots in the Layout Editor, the Table Editor is setup for batching numbers such as summary statistics (mean, median, CV, etc.), gate frequencies, values of… Read more »

Preferences can be used to fine-tune FlowJo to your specific analysis habits. You can save default settings like the number of significant digits, linear or log scaling, and font sizes, among others. Usually preferences are set from the main Preferences panel. This document focuses on the Preferences panel. Select the Preferences icon  or the Shortcut Key:… Read more »

When you add keyword combination, the file name is changed from the acquisition name to the keywords that you choose. Drop down menu reads: Annotation in the default settings when the Workspace is empty, more keywords are available when data samples are loaded into the Workspace. Default settings without samples: Once samples are loaded, the keyword… Read more »

Select the Workspace button in the Preferences tool to open the Workspace preferences. Sample Display Naming FCS Default: Uses the FCS standard identification keyword as the display name for samples in the workspace. Use Short File Name: Uses the file name as seen by the operating system for sample names Use Full Path and File: Used when resolving… Read more »